SE3520598

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6816
  • Mimulus guttatus
  • SE3520598
  • Mutator
  • M3
  • scaffold_9:12432700-12433147
  • AATATGTTA
  • AATATGTTAGGGTAAATTACACCTACACCCCTAAAGTATGCTAAAATAACTTTGAGGTCTCTCTAGTATCGGTAATTACAATCACTCCCTGAA

Secondary structure and sequence

TSD    TIR
5'



3'
         A                       AAA                 T       CTC      C          A    -        ACATT      AA      CGGAATAATACATTGGATAAGTTATTTCGTTAGGGATCTAACGGACTATTAGTTTCAGGCAGTGTTGGAGACAAACATAGAGAACTAGAGTGTCACACGACTCTCCTAACA
 AATATGTT GGGTAAATTACACCTACACCCCT   GTATGCTAAAATAACTT GAGGTCT   TAGTAT GGTAATTACA TCAC TCCCTGAA     GTTAGA  CCCTAA                                                                                                               
 |||||||| |||||||||||||||||||||||   ||||||||||||||||| |||||||   |||||| |||||||||| |||| ||||||||     ||||||  ||||||                                                                                                               T
 TTGTATAA CCCATTTAATGTGGATGTGGGGA   CGTGCGATTTTATTGAA TTCCAGG   ATCATA CCATTAATGT AGTG GGGGATTT     ATGGCC  GGTTCT                                                                                                               
A        -                       CGC                 C       TAC      A          C    T        CTTTA      TC      AAAGCACAGGACCCCTGGCTATACGTGATATATAACAAAGGGGCGCCCCGACAATTACGATAGTATCTGTATTTTAATATTTAAAATATATTTTATTCTTCTTAAATTTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End