SE3520599

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6817
  • Mimulus guttatus
  • SE3520599
  • Mutator
  • M9
  • scaffold_11:22874987-22875320
  • GTTATTATT
  • CGGAAAAAATACAGTTTTTGTTCCTCAAGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTATTATT   A    A  C          C        ATTAT   T       A    G    C              -                      CAA    CT  A     A        C             TAAAACTAACGGAATCAAGCGTGT
         CGG AAAA TA AGTTTTTGTT CTCAAGTT     CGA TTTCACA TTGG CCCT ATGTTCACAAAAAA CACATTTGGTCCCTCATGTTTC   AATT  AC CTTTT GTCATTTC GTCAATTTTCCGT                        
         ||| |||| || |||||||||| ||||||||     ||| ||||||| |||| |||| |||||||||||||| ||||||||||||||||||||||   ||||  || ||||| |||||||| |||||||||||||                         
         GCC TTTT AT TCAAAAGTAG GAGTTTAA     GCT AAAGTGT AACC GGGG TACAAGTGTTTTTT GTGTAAACCAGGGAGTACAAAG   TTAA  TG GAAAA CAGTAAAG CAGTTAAATTGCA                        
CTTATTATT   C    A  A          A        -ACGT   T       A    A    A              T                      TTA    AT  C     G        A             ATCAGACAAATCAGTAACTACCCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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