Plant MITE

SE3520600

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6818
Mimulus guttatus
SE3520600
Mutator
M17
scaffold_7:2895823-2896071
TAAATACAA
AGGGTAAATTACAACATTCTCCCTGAAGTTAAAGT

Secondary structure and sequence

TSD TIR

5'

3'

TAAATACA              -   TCT      A  TA    -GCAA        AA  C   TC     --GGGA        -CCAA    A        A     G        CCAC     CTAT
        AGGGTAAATTACAA CAT   CCCTGA GT  AAGT     TTACAAAA  AA CCT  CATTT      AATTACAT     CCCT TGTGGTTT TAAAT TCTTACAT    CACCC    
        |||||||||||||| |||   |||||| ||  ||||     ||||||||  || |||  |||||      ||||||||     |||| |||||||| ||||| ||||||||    |||||     
        TCCCATTTAATGTT GTG   GGGACT CA  TTCA     AATGTTTT  TT GGA  GTAAA      TTAATGTA     GGGA ACATTAAA ATTTA AGAATGTA    GTGGG    
AACATAAA              A   ---      C  --    AAATA        -G  A   --     AAAGTA        AATAA    -        C     A        -ATT     ATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520600

TAAATACAAGGGTAAATTACAACATTCTCCCTGAAGTTAAAGTGCAATTACAAAAAAAACCCTTCCATTTGGGAAATTACATCCAACCCTATGTGGTTTATAAATGTCTTACATCCACCACCCCTATAATAGGGTGTTAATGTAAGAAATTTACAAATTACAAGGGAATAAATGTAATTATGAAAAAATGAGGATTGTTTTGTAAATAAAACTTACCTCAGGGGTGATTGTAATTTACCCTAAATACAA

Copy Cancel