SE3520601

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6819
  • Mimulus guttatus
  • SE3520601
  • Mutator
  • M8
  • scaffold_9:2692091-2692557
  • TTTTCGAAA
  • TTTCGAAAGGGTAAATTACAATCACCTCCTAAGGTATGGTTAAATTACAAAA

Secondary structure and sequence

TSD    TIR
5'



3'
T        -          C       T   A            A    A   CCCCC    CT     A         A    C          -AAATC    C   C           C   T    ATTTAGTGGAATCTTCGAGATTATATGGAATATTATTACTTTTGTACCCGTTTTATCCCATTCGAACTCCACATTTTGAAGCAAGATGATCGTAATATGTGTTTT
 TTTCGAAA GGGTAAATTA AATCACC CCT AGGTATGGTTAA TTAC AAA     CCTC  GTTTG GTAATTACA CTAC CCTCAACTAT      TTCT ACA TTCCACCCTTG GGT TCAA                                                                                                         
 |||||||| |||||||||| ||||||| ||| |||||||||||| |||| |||     ||||  ||||| ||||||||| |||| ||||||||||      |||| ||| ||||||||||| ||| ||||                                                                                                          
 AAAGCTTT CCCATTTAAT TTGGTGG GGA TCCATACCGGTT AATG TTT     GGAG  CAAAC TATTAATGT GATG GGAGTTGATA      AAGA TGT GAGGTGGGAAT CCA CAAT                                                                                                         
         T          A       -   C            A    C   TTTTT    AT     C         A    T          CTAAAA    A   A           A   -    TTAAGTTGTATTAGTTGATCTAAAGCACCTTACACTAGATCAAACATGAGCAAAACACATTTTTATGTCAAATACTACGTGGTGTTAGACTATATATGTTCGGTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End