SE3520602

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6820
  • Mimulus guttatus
  • SE3520602
  • Mutator
  • M47
  • scaffold_13:6728931-6729473
  • TTTATTGTT
  • GGGTAAATTATGAAACTCCCCCTGAACTTGGGTTAAATTACAAAAAAACCCCACCTATCCGTAATTACCAGAATCCCCCCGACGTTCGTTTCCATCTTACAACAACCCCTTACGGTGTGATTTTTCATGGAACCTTTTTTATTCCAAGTAATATTTCCCAGAAAATGCTGATTCTACCCCTACAGATGCAGCATTTCTTGATGCTACTTTTTAAAGGCAAAAATTACCCTCAGAGGGG

Secondary structure and sequence

TSD    TIR
5'



3'
TTTATTGTT                T                       CA     -    C       CG             C           C    CCA       A      -                  A     C           C      -       CA       C           CTA      CA         G                            C     G   --CTTTACA   AATCTTTACTTAC
         GGGTAAATTATGAAAC CCCCCTGAACTTGGGTTAAATTA  AAAAA ACCC ACCTATC  TAATTACCAGAAT CCCCCGACGTT GTTT   TCTTACA CAACCC CTTACGGTGTGATTTTTC TGGAA CTTTTTTATTC AAGTAA TATTTCC  GAAAATG TGATTCTACCC   CAGATG  GCATTTCTT ATGCTACTTTTTAAAGGCAAAAATTACC TCAGA GGG         TGA             
         |||||||||||||||| |||||||||||||||||||||||  ||||| |||| |||||||  ||||||||||||| ||||||||||| ||||   ||||||| |||||| |||||||||||||||||| ||||| ||||||||||| |||||| |||||||  ||||||| |||||||||||   ||||||  ||||||||| |||||||||||||||||||||||||||| ||||| |||         |||             C
         CCCATTTAGTGCTTTG GGGGGATTTGAATCCGATTTAAT  TTTTT TGGG TGGATAG  ATTAATGGTTTTA GGGGGCTGCAA CAAA   AGAATGT GTTGGG GAATGCCACATTAAAAAG GTCTT GAAAAAATAAG TTCATT ATAAAGG  TTTTTAT ATTAAGATGGG   GTTTGC  TGTAAAGAA TACGATGAAAAATTTCTGTTTTTAATGG AGTTT TCC         TGA             
TTGTTATTT                -                       AC     G    T       TA             T           A    AAC       G      A                  C     A           -      T       -C       A           AAC      AC         A                            T     A   ATTACCACA   TTTTTCAACACTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End