SE3550603

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6821
  • Mimulus guttatus
  • SE3550603
  • PIF/harbinger
  • To2
  • scaffold_11:11440587-11440807
  • TTA
  • AGGCCTCGTTTGGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               ----------  G     AAGCCATGATTAATTAAATAATAGGACTTGTCGGTATCCCCAATAACTTGTCGGCTCGACTCGCAAATATTATGTTATCGT
  AGGCCTCGTTTGGTT          GG GAGAT                                                                                 
  |||||||||||||||          || |||||                                                                                  
  TCCGGAGCAAACCAA          GT AATTT                                                                                 
AT               CGGTTCTATT  -     ATTAGATTACTTTTAGGTTAATAAAATAGCCTAGGAAAACTGCGGGTTGTTTTTTTTCGAAGGTAGTTCCGTTCTATTCGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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