Plant MITE

SE3520604

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6822
Mimulus guttatus
SE3520604
Mutator
M9
scaffold_7:11451625-11451959
ATATTAAAA
TTAAAATGGGAAATTTACTGTTTCCATCCCTCAAGTTTGCTCCAATTTCACATTTGGTCCCTATGTTCACAAAAAACACATTTGGTCCCTCATGCTTCAATAATTTGACATTTTTGGTCATT

Secondary structure and sequence

TSD TIR

5'

3'

ATA    AA       TT   T    C   C                      C       C                                   C     T              -       CTCA       G       TCCATC   T    TAG   TA GA
   TTAA  TGGGAAA  TAC GTTT CAT CCTCAAGTTTGCTCCAATTTCA ATTTGGT CCTATGTTCACAAAAAACACATTTGGTCCCTCATG TTCAA AATTTGACATTTTT GGTCATT    TCAATTT CTGTTAA      AGT ACGG   TGA  G  
   ||||  |||||||  ||| |||| ||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||    ||||||| |||||||      ||| ||||   |||  |  A
   AATT  ACCCTTT  ATG CAAA GTA GGAGTTCAAACGAGGTTAAAGT TAAACCA GGGTACAAGTGTTTTTTGTGTAAACCAGGGAGTAC AAGTT TTAAGTTGTAAAAA TCAGTAA    AGTTAAA GGCAATT      TCA TGCC   ACT  C  
TAA    AA       TT   T    A   A                      A       A                                   A     T              A       AAAC       A       -----T   T    TTA   TG AC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520604

ATATTAAAATGGGAAATTTACTGTTTCCATCCCTCAAGTTTGCTCCAATTTCACATTTGGTCCCTATGTTCACAAAAAACACATTTGGTCCCTCATGCTTCAATAATTTGACATTTTTGGTCATTCTCATCAATTTGCTGTTAATCCATCAGTTACGGTAGTGATAGGAACACGTTCAATTCCGTTACTTTTAACGGAAAATTGACAAAAATGACTAAAAAATGTTGAATTTTTGAAACATGAGGGACCAAATGTGTTTTTTGTGAACATGGGAACCAAATATGAAATTGGAGCAAACTTGAGGAATGAAAACTGTATTTTTCCCAAATTAAAAT

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