SE3520607

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6825
  • Mimulus guttatus
  • SE3520607
  • Mutator
  • M4
  • scaffold_4:13511569-13512073
  • ATAATTTTT
  • TGGGCAAATTCCACTTACTCCTTGTACTTTGGTTCGGTATCACTTTACCTCTTTCTACTCTCGATTTCATCAATTTGCCCCCTACACTTGAAAAATTGTCTCAATATGGCCTTCGTTCTTAGTT

Secondary structure and sequence

TSD    TIR
5'



3'
ATAATTTT    C      C    -A    --          G    G                             T          C C   -A                T  -ATA G     --   TCT     GTCAC    -   A      C       C         AACCTC     TTAC        CA   CT                  TTAT              ------------   AAGACAACGAGATA
        TGGG AAATTC ACTT  CTCC  TTGTACTTTG TTCG TATCACTTTACCTCTTTCTACTCTCGATT CATCAATTTG C CCT  CACTTGAAAAATTGTC CA    T GCCTT  CGT   TAGTT     TTCA GAC TTTGAC TTAACAC GTTTGGTCT      TGAAA    AAAAACGT  TCC  TCCCAGTTTAAATAATTA    TAAAGAAATAAAAA            ATC              
        |||| |||||| ||||  ||||  |||||||||| |||| ||||||||||||||||||||||||||||| |||||||||| | |||  |||||||||||||||| ||    | |||||  |||   |||||     |||| ||| |||||| ||||||| |||||||||      |||||    ||||||||  |||  ||||||||||||||||||    ||||||||||||||            |||               
        ACTC TTTAAG TGAA  GAGG  AACATGAAAC GAGC ATAGTGAAATGGGGGAAGATGAGAGCTAA GTAGTTAAAC G GGA  GTGAATTTTTTAACAG GT    G CGGAG  GCA   ATCAA     AAGT TTG AAACTG AATTGTG CAAACCAGA      ATTTT    TTTTTGTA  AGG  AGGGTTAAATTTATTAAT    ATTTTTTTATTTTT            CGG              
TTTTTAAT    A      -    AA    TC          G    A                             C          C A   AC                T  CACA G     TG   ---     -----    A   -      T       A         CTTTTA     -TTT        --   --                  ----              ATTTAACACCAA   CGACACCTGATACG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End