SE3530608

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6826
  • Mimulus guttatus
  • SE3530608
  • hAT
  • Hat11
  • scaffold_8:3300743-3301423
  • GTCGGGCT
  • GTCGGGCTTAGGGGTGAAAGTCGGATGGAT

Secondary structure and sequence

TSD    TIR
5'



3'
    G    T       A    C   -     -    TC  AATTAGCCTTTTCGGAAAATTTCCAAAAAAATTCGGAAGTACAAAATCAATTCCAATTCCATTTCCAAAATTTTCGGAATCTAAAAATTCATTCCAATTCCAAAAGGCCCGGAAATTTCGGAATTTCGGAAAAAAATCGGAAATCACATAAGCTTTAAAATTTCAAAACTTAGCCGAAATTTTCTAAAATGTTCATAATTTTTTCAAAAATAAGAGCATCCACGTCGATAAAAGTAAAACTAATAACTACAAAATTTCAGTTCAAAAAAATAAATAAAAATAAACACATCATAATATCCAAT
 GTC GGCT AGGGGTG AAGT GGA TGGAT CGGA  GG                                                                                                                                                                                                                                                                                                              
 ||| |||| ||||||| |||| ||| ||||| ||||  ||                                                                                                                                                                                                                                                                                                              A
 CGG CTGA TCCCCAC TTCA CCT GCCTA AAGG  TT                                                                                                                                                                                                                                                                                                              
T   G    -       G    A   T     A    --  AAAGGCGGCCAAGGCTAGGCTTTTCAAGGCCAAAACCTTGTTGAAAAAAGTAAGGTTGAAGGCTTTAAGGCTAAAGGCTTTAAAAGGCTAAAAAAACCTAACATTAACCTTAATATATTTTATTTAAACCTTAAAGGCTAAAGGCTAGGCTAAATTAAGGTTTTAATTAAGGGTTTTTAAAGCTAAAAAAAGGCTTTTTATGTGGATATTTATCATATATAATATATTATGAATAAAAGGCTTTTTATTTGGATATTCAAAACAAAATCCTAAAACTGTATTACTTAACAACAATCTTCAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End