SE3510610

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6828
  • Mimulus guttatus
  • SE3510610
  • Tc1/Mariner
  • St2
  • scaffold_8:20587986-20588262
  • TA
  • TACTCCCTCCTTCCCTGAATAGTTGTCACTTTTGTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
                G    G               GTTGCACACA    A     C     A  --  T ----   T  TA  AGCAAAAAGTATAGTAAATCACTAAAATGTCCATGCTATTAATTGATTTTTAAATAATTAT
TACTCCCTCCTTCCCT AATA TTGTCACTTTTGTTA          TATT AGAAA TCAAT AA  TA G    CAT GG  GT                                                             
|||||||||||||||| |||| |||||||||||||||          |||| ||||| ||||| ||  || |    ||| ||  ||                                                              
ATGAGGGAGGAAGGGA TTAT AACAGTGAAAACGGT          AATA TAAAG TTTAA TA  CA T    TGA TA  AG                                                             
                A    A               -----AAAAA    -     -     -  AA  G AAAA   -  --  GTTACTTATTAATTAACAATAAAAAGTTAAAACGGGAAAGAGTGAGTATTAATTAACTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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