Plant MITE

SE3520612

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6830
Mimulus guttatus
SE3520612
Mutator
M2
scaffold_6:13618063-13618416
TAATATAAA
AGGGCAAATTACGGCCACCCCTGAGATATGACCAAATTACGAAAAATCTCTCTTGTTTGGGTAATTATAGCCACCCCTCA

Secondary structure and sequence

TSD TIR

5'

3'

TAATATAA                         A    AC              -                              -C   TTTTTAATATTT     -  AAATTTATGTAATTCGTTTATTTACCGAACCAAATCGTATATTCAGTCCGGTAAACAGTATGAAATGTTGGC
        AGGGCAAATTACGGCCACCCCTGAG TATG  CAAATTACGAAAAA TCTCTCTTGTTTGGGTAATTATAGCCACCC  TCA            TTACA TA                                                                        
        ||||||||||||||||||||||||| ||||  |||||||||||||| ||||||||||||||||||||||||||||||  |||            ||||| ||                                                                         
        TCCCGTTTAATGCCGGTGGGGACTC ATAC  GTTTAATGCTTTTT GGGGAGGACAAACCCATTAATGTCGGTGGG  AGT            CATAA AG                                                                        
AAATATAA                         G    CA              T                              TA   -------TGATA     C  AATGCTTTTATGGGGAGGTCTCCATTTAATTCCTTACAATTTAGCCATTTTTGGCTTAGCTTTAAAGCCATG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520612

TAATATAAAGGGCAAATTACGGCCACCCCTGAGATATGACCAAATTACGAAAAATCTCTCTTGTTTGGGTAATTATAGCCACCCCTCATTTTTAATATTTTTACATAAAATTTATGTAATTCGTTTATTTACCGAACCAAATCGTATATTCAGTCCGGTAAACAGTATGAAATGTTGGCGTACCGAAATTTCGATTCGGTTTTTACCGATTTAACATTCCTTAATTTACCTCTGGAGGGGTATTTTCGTAAGACAATACATAGTTGAATGGGTGGCTGTAATTACCCAAACAGGAGGGGTTTTTTCGTAATTTGACCATAGCTCAGGGGTGGCCGTAATTTGCCCTAATATAAA

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