SE3530613

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6831
  • Mimulus guttatus
  • SE3530613
  • hAT
  • Hat24
  • scaffold_6:16370176-16370943
  • CTCCCACC
  • TAGGGCTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
CTCCCACC     C   AAAATAAT     CCTACCGAATACCACGGTATACCTACCAAACAATACCGAAAAATTACCGAAACTTCGGTAACTATTACATTTGGTACGGTATTAGTACCATACCACTATTATACGGTACGGTAGCGGTATTGTATTTCAGTACCATGGGAATACCGTACCGTACCACAAATTTGAATTTTATAATTTAATTAATGTATATTTATTTTATATTGGTTAATAATTAACTAAAATTAAAATTACTACATAAAATAAATAGGTCGAAACTTAAAAAAGTTAAAATACAATTCTTAAAAAATTATGAGAAAACATTGAAGCTTAGTGCAACAAAAAAACGTACATCCCATTTGGTTTTCACTGAAATAATAG
        TAGGG TGG        TACCA                                                                                                                                                                                                                                                                                                                                                                     
        ||||| |||        |||||                                                                                                                                                                                                                                                                                                                                                                     A
        ATCCC ACC        AAGCC                                                                                                                                                                                                                                                                                                                                                                     
CCACCCTC     C   -------A     ATGCCAACGGCTTATAAAACTAGTTATGGCACATGGATGGCTTAATATACCATAACTTTTTAAGCTATGGCAATGGCATGGTTGTTCACGCCATATGGCAATAAGCCATATGGCAATGAAAGCCATGTCATATAGCCATATACCATGAGATGGCAATTAAAATTAAACAATATGAAACTTCTGCTAGAAATATTTTTGTGTTATGAACTTTGTTCTTGTAACCGATAAATATATTAGAATAAGTTAAAAAGTTTCGAGGAAGTAATAAATAGTTTGAAATTGAAGTAACTAAATCACTGTGGAACGTTTTATTCTAATGATCTCAGTACTAAAAAAAAAAGTTAGAGTTAAACGTCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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