SE3520615

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6833
  • Mimulus guttatus
  • SE3520615
  • Mutator
  • M43
  • scaffold_2:6310791-6310982
  • ATTACGTAA
  • ATTACGTAATGCTTTTTGAGATACTATACCTGGTTAAATACAATGGATAATTATTAATTGTTGAT

Secondary structure and sequence

TSD    TIR
5'



3'
    C      CTT    --A   A     C    TT   T   A   ATA                AC  T   ATAACTTCCCACTATGCACACATA
ATTA GTAATG   TTTG   GAT CTATA CTGG  AAA ACA TGG   ATTATTAATTGTTGAT  GG GAA                        
|||| ||||||   ||||   ||| ||||| ||||  ||| ||| |||   ||||||||||||||||  || |||                         
TAAT CATTAC   AAAC   CTA GATAT GGCT  TTT TGT GCC   TAATAATTGGCAACTA  AC GTG                        
    T      --C    AAA   C     A    TC   T   A   CAC                -G  -   TGTTAGTATGTGTGTGTGGTACAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End