Plant MITE

SE3540616

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6834
Mimulus guttatus
SE3540616
CACTA
Ca1
scaffold_13:5273281-5273574
ACA
CACTAGTAGAAAATTTGCTTATTACTATGA

Secondary structure and sequence

TSD TIR

5'

3'

ACA             TTT    A         AA      -  TACGGTAAAAAACCGTAATAAAAGGTATTTTTTACTACGGAACAATTTTGAAGTCATAGTAAATACTAGGATTTACCGTAGCAAAAAAATATTTGGTACGGCCA
   CACTAGTAGAAAA   GCTT TTACTATGA  TTTTTT GC                                                                                                        
   |||||||||||||   |||| |||||||||  |||||| ||                                                                                                         
   GTGATCATCTTTT   CGAA AATGATGCT  GTAATT GC                                                                                                        
ACA             TAC    A         -A      A  ATCGTTTTCCATAGTTTAAGCATGATTTTTCCGAAAACGATGCGTAAACGATGCTTAAACGGGGCATCGTATATGCCCGCACTGTTTTCGAAACGATGCCAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3540616

ACACACTAGTAGAAAATTTGCTTATTACTATGAAATTTTTTGCTACGGTAAAAAACCGTAATAAAAGGTATTTTTTACTACGGAACAATTTTGAAGTCATAGTAAATACTAGGATTTACCGTAGCAAAAAAATATTTGGTACGGCCATTAACCGTAGCAAAGCTTTTGTCACGCCCGTATATGCTACGGGGCAAATTCGTAGCAAATGCGTAGCAAAAGCCTTTTTAGTACGAATTTGATACCTTTTGCTACGATTAATGATCGTAGTAAAAAGCCATTTTTCTACTAGTGACA

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