SE3530617

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6835
  • Mimulus guttatus
  • SE3530617
  • hAT
  • Hat3
  • scaffold_4:18054783-18055512
  • ATTATATA
  • TATATATAGGGCTGGGACTGGGTTGG

Secondary structure and sequence

TSD    TIR
5'



3'
AT      --                    ------- T   T  AT  CC    TAAA       -   ---------    TCA  -   TT     -- CAA    AAAA   GTTGCCGACCCAACCTTTGTGGGTCGGTTGGTGGATGGCAACCGAATATTTGGTTCCGGAATGGGTCGGTTGATGGTTTATACCCGCCGCCTAGTTCACTTAAAAAAATTCAAATTTTGGAGTAAAAATATCCACGTTTTGCGTAATGCCACGGTGCGATCATCATTTATCAGTTCAAAATAATCAATAACAATTTAACGAAAAAATATAATTAGGAAATTCAAAGTAATTTCAAACATGCACAAAATATTTAATGGAGTTTTACAGGCT
  TATATA  TAGGGCTGGGACTGGGTTGG       G CGG CG  TA  AGCC    AACCGAC CCA         TCCG   AA CCA  TTTGC  T   ATTT    ACC                                                                                                                                                                                                                                                                              
  ||||||  ||||||||||||||||||||       | ||| ||  ||  ||||    ||||||| |||         ||||   || |||  |||||  |   ||||    |||                                                                                                                                                                                                                                                                              T
  ATATAT  ATCCCGACCCTGACCCAACC       G GTG GT  TG  GCTG    GGTAATG CTG         TCCG   CC ATT  TAAAA  T   GGCT    AGG                                                                                                                                                                                                                                                                              
        TA                    AAAAATA -   -  --  --    ----       G   GTATAAAAA    ---  T   AA     AA --T    ----   TAACCTAGCCCAGCTTTTAAAGTTGGTTGGGTAGATATTACCCAGCCAACCACCAAAGATTATAATAGTTTTCAACCAACTGGCTATTAATAGCCAATAGGTTGATATGTTAATTTTAAAATAATTTTTATATTTTGTTTCCGATACAAAAGAACTCACTAAAAACTTTAATAGTTTTAATAATCATAAAGTTTAAAATTTTGTTACTTATTTCCTTTTTTTAAACTGGATTTAGAAGTTGATCAAAGAAATACGGGTTAGAATTTATTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End