SE3550618

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6836
  • Mimulus guttatus
  • SE3550618
  • PIF/harbinger
  • To13
  • scaffold_8:20197544-20197912
  • TAA
  • AGAGCAACTCCAATGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                AGGCACTAAAT           CTAAAAAACTACC     -    CTCTAAAATTAAAAAATCCTTCCCCAACGGAGGCATTAAATGGAGAATTATTTTGATACTCAACTACCCGAGGTGCAAAAATACTCCCTGGAAAATGAGGTATCAAAAATATAACCACTCCATTAACCTATC
  AGAGCAACTCCAATGG           GAGGTATCAAA             ACTTT GATG                                                                                                                                    
  ||||||||||||||||           |||||||||||             ||||| ||||                                                                                                                                     
  TCTCGTTGAGGTTACC           CTCTATAGTTT             TCGTA TTTA                                                                                                                                    
AA                -----------           ---------TACC     A    TAAGTAAACTATGAACTATATTATGAAACTATGAAGAACTTTTTTTTAAGTGAGGTTGGTGCTCATAGTTTATCTAATAGTTTAAAATTTATATACTTATTAATAAAAAAATTTACGGTGCACAGTTTAACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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