SE3510619

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6837
  • Mimulus guttatus
  • SE3510619
  • Tc1/Mariner
  • St3
  • scaffold_9:13401791-13402078
  • TA
  • TACTCCCTCCGTTTCATTTTAATTGTCGTTTTTTAGCTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
                 TT  A          TT  CT  -------------------     AAGATTAAGAATTTTAGTAAATGTGTCTTGATTTTAGAAAAATATATGCATTTTGACTAAAATGACCTTGACTTATAATTAATAAGAGA
TACTCCCTCCGTTTCAT  TA TTGTCGTTTT  AG  TT                   GCACA                                                                                         
|||||||||||||||||  || ||||||||||  ||  ||                   |||||                                                                                         G
ATGAGGGAGGCAAAGTA  AT GACAGCAAAA  TC  AA                   ACAGC                                                                                         
                 TT  A          CC  TT  AAAAAACAAAGTATAATAA     GAAATTTAAAGGTTGTGAAGTAATTAATGAATTAAAAGTAATATATGGGGATAATTAATAAAGGTTATGAGAAAAAAGTTGATTAAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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