SE3520622

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6840
  • Mimulus guttatus
  • SE3520622
  • Mutator
  • M6
  • scaffold_2:4307185-4307354
  • TTAAAATCG
  • GGGTTATTTCTATGCTACACCCGATGAAGGTTACACCGGGTGATTTTTTACCGTTGATCTACACACACC

Secondary structure and sequence

TSD    TIR
5'



3' 
 TTAAAATC  G    TT            C A     GT           AT      C    ----------  TC         - AAT
         GG TTAT  CTATGCTACACC G TGAAG  TACACCGGGTG  TTTTTA CGTT          GA  TACACACAC C   
         || ||||  |||||||||||| | |||||  |||||||||||  |||||| ||||          ||  ||||||||| |   G
         CC AATA  GATACGATGTGG C ACTTT  ATGTGGCCTAT  AGAAAT GTAA          CT  ATGTGTGTG G   
GCTAAAATT  G    -T            C C     --           CT      A    GTATATGTGT  TT         T AGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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