Plant MITE

SE3510623

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6841
Mimulus guttatus
SE3510623
Tc1/Mariner
St3
scaffold_14:15036532-15036819
TA
TACTCCCTCCGTTTCATTTTAATTGTCGT

Secondary structure and sequence

TSD TIR

5'

3'

         C       TT  A       -     - G    GCACAAAGATGAAGAATTTTATTAAATGTGTCTTGATTTTAGGAAAATGTATTCATTTTGACTAAAATGACCTTGACTTATAATTAATAAGAGAGATAAATTA
TACTCCCTC GTTTCAT  TA TTGTCGT TTTTC A CTTT                                                                                                       
||||||||| |||||||  || ||||||| ||||| | ||||                                                                                                       G
ATGAGGGAG CAAAGTA  AT GACAGCG AACCT T TAAA                                                                                                       
         A       TT  A       A     C -    AAAAACAAAGTATAATAGACAGTGAAATTTAAAGGTTGTGAAGTAATTAATGAATTAAAGGTAATATATGGGGATAATTTATAAAGGTTATGAGAAAAAAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3510623

TACTCCCTCCGTTTCATTTTAATTGTCGTTTTTCAGCTTTGCACAAAGATGAAGAATTTTATTAAATGTGTCTTGATTTTAGGAAAATGTATTCATTTTGACTAAAATGACCTTGACTTATAATTAATAAGAGAGATAAATTAGTTAAAAAAAGAGTATTGGAAATATTTAATAGGGGTATATAATGGAAATTAAGTAATTAATGAAGTGTTGGAAATTTAAAGTGACAGATAATATGAAACAAAAAAAATTCTCCAAAGCGACAGATATTATGAAACAGAGGGAGTA

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