SE3550624

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6842
  • Mimulus guttatus
  • SE3550624
  • PIF/harbinger
  • To2
  • scaffold_6:9074851-9075082
  • TAA
  • AGGCCTCGTTTGGTTGCCAAGCTAGGATTAGCTAAGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                -----CCA     G          --   AACTTTAAATA        AAAACCCAATTGTTTCATTGGATCCTGGAAGGTCAATAAAAAAACCTCCCTAAAAGGCA
  AGGCCTCGTTTGGTTG        AGCTA GATTAGCTAA  GAT           ATCTAATG                                                           
  ||||||||||||||||        ||||| ||||||||||  |||           ||||||||                                                            
  TCCGGAGCAAACCAAC        TCGGT CTAATTGATT  CTA           ACCTTAAA                                                           
AA                CCCCCAAA     A          TA   -----------        CAAACTAAAAACCATTTGGGGTATTGAAGAGCCCAGCTGGGCCTTTATAATACAATAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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