SE3520625

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6843
  • Mimulus guttatus
  • SE3520625
  • Mutator
  • M19
  • scaffold_1:5404924-5405354
  • TATAATTAA
  • TAATTAAGGCATAATTTCACTTTCCACCCTCGGAATATATCATTTTGCCACTTTGCACTCTCAAAATAATTTCTGGTACTTTGCACCCTTGAAATATATTTAATCGTTCAGATTGCACCCTAGTTTATTTTTCGGCCATAATTTCCGTCGTTGACCTAATTTCTGATATTCAACA

Secondary structure and sequence

TSD    TIR
5'



3'
TA     -A   CA            C                C  T   C  C          -C          C                        A    ATC       T     C             C  C        -CC      G  C  A        AT      -------------------AA    ATTTTGCTAGAAAATACATTAG
  TAATT  AGG  TAATTTCACTTT CACCCTCGGAATATAT AT TTG CA TTTGCACTCT  AAAATAATTT TGGTACTTTGCACCCTTGAAATAT TTTA   GTTCAGA TGCAC CTAGTTTATTTTT GG CATAATTT   GTCGTT AC TA TTTCTGAT  TCAACA                     GTCA                      
  |||||  |||  |||||||||||| |||||||||||||||| || ||| || ||||||||||  |||||||||| |||||||||||||||||||||||| ||||   ||||||| ||||| ||||||||||||| || ||||||||   |||||| || || ||||||||  ||||||                     ||||                      C
  ATTAA  TCC  ATTAAAGTGAGA GTGGGAGCTTTATATA TA AAT GT AAACGTGGGA  TTTTATTGAA ACCGTGAAACGTGGGAGTTTTGTA AAAT   TAAGTTT GCGTG GATTAAATAAAAG CC GTATTAAA   TAGCAA TG AT AAAGGCTA  AGTTGT                     GACT                      
 A     AA   TA            C                T  T   C  -          TC          T                        C    GAA       C     T             A  T        AAA      A  A  A        GC      ACCATTAAAAACAGATAAGTT    AAAAAAGAAGTCCCACGTTTAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End