SE3550626

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6844
  • Mimulus guttatus
  • SE3550626
  • PIF/harbinger
  • To1
  • scaffold_2:9119615-9119898
  • TTA
  • AGGTGGTGTTTGCAAATGCTTTTTGAAAGTGATT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                  -CTT         ----------------    --ATGC      TTT    AATAATT        ---------            ----ATCAACTTTT  TTTTGCTTCTCTTAAAATAATCTGCTTTAAGCTATTT
  AGGTGGTGTTTGCAAATG    TTTGAAAGT                GATT      GGTTTT   TGCT       TGTTTTTA         GGTGTTTGCAAA              GC                                     
  ||||||||||||||||||    |||||||||                ||||      ||||||   ||||       ||||||||         ||||||||||||              ||                                     T
  TCCACCACAAACGTTTAC    AAATTTTCG                CTAA      TCAAAA   ACGA       ATAAAGAT         CCACAAACGTTT              TT                                     
AT                  TAAT         TCTTCAATCACTAACA    ATTCAA      TTC    -------        TTTCAACCC            ATAAAGCCTTTTAC  GATTTTAACTTTTTCGTCCCAATCCCCACGAAAATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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