SE3520628

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6846
  • Mimulus guttatus
  • SE3520628
  • Mutator
  • M16
  • scaffold_6:17543368-17543578
  • TCAAGTTTG
  • CAAGTTTGGATTTGTTCGACCCTACACCCGGTGATAACTACCGGGTAGGTCTTCTGCTGCCACGTGTCTCTTTTTTGTATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
T        - A   G     C                 C        A                    C        --G      ATAA    TT    GCT   GT
 CAAGTTTG G TTT TTCGA CCTACACCCGGTGATAA TACCGGGT GGTCTTCTGCTGCCACGTGT TCTTTTTT   TATTTT    TAAA  CCCC   AGG  
 |||||||| | ||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||   ||||||    ||||  ||||   |||  T
 GTTTGAAC C AAG AAGCT GGATGTGGGCCACTATT GTGGCCCA CCAGAAGATGACGGTGCACA AGAAAAAA   ATAAAA    ATTT  GGGG   TCC  
         T C   G     A                 T        C                    -        AAA      --AG    -T    ATT   AT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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