SE3540629

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6847
  • Mimulus guttatus
  • SE3540629
  • CACTA
  • Ca1
  • scaffold_14:17965114-17965396
  • AAG
  • CACTAGTAGAAAAATGGCTTTTTACTACGA

Secondary structure and sequence

TSD    TIR
5'



3' 
AAG             ATG    T         --TCA      GCAAAAGATATTAAATTCGTACTAAAAAGACTTTTGCTACGAATTTGCCCCGTAACATATACGGGCGTGACAAAAACTTTGCTACGATAAATAGCTGT
   CACTAGTAGAAAA   GCTT TTACTACGA     TTAATA                                                                                                  
   |||||||||||||   |||| |||||||||     ||||||                                                                                                  A
   GTGATCATCTTTT   CGAA AATGATGCT     AAACGA                                                                                                  
GAA             AAA    T         TTTAA      TGCCATTTTTTGGCATTATTTTCCATAAAAAAATGATGCCTTGTTAAATCTTCAGAATCATTTATGATCTTAGATGGCATCGTTTTTTTATATTATCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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