SE3530630

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6848
  • Mimulus guttatus
  • SE3530630
  • hAT
  • Hat30
  • scaffold_11:18181563-18181910
  • GATATGAA
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
           AACA   - CGGCTCAAGCCCATATGGGGCCCTAGGCAAAATAATAAATTTGGGGCCTTTTATATTAATTTTCTAATATAAAATTAAATATTTTGGATATTTTTATTTTAGTTTAAATACACGTATTAAAATTATTAATTAGTATATTATTTTTTTTTACAAAATTCA
     GATATG    GGG C                                                                                                                                                               
     ||||||    ||| |                                                                                                                                                                
     TAGGTC    CGG C                                                                                                                                                               
AAGTA      ----   G CGGGATCCGATATCCGTTGAAACCGGATACGGATCCCGGGGGTTGAATACTCATAATATCAACCCCGGGGTTTTTAATACAAATGATATCAATCCCGGGGGTTTATGCTTTATTTTAAATATAAAAGAATAAAATTTTTTTTATAATTATATATATCGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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