SE3510631

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6849
  • Mimulus guttatus
  • SE3510631
  • Tc1/Mariner
  • St4
  • scaffold_1:5198439-5198716
  • TA
  • TACTCCCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
         -------C     C  TTAAGTGTCGTTTTTGGCTTTGCACAAGAATTAAGAAGCTCAATAAATGTGTCTTGATTTTAGGTAAAATATATTAGAAAGACTAAAATAACCTTTATTATTTAATGATGTGATAAGA
TACTCCCTC        GTTCC TA                                                                                                                      
|||||||||        ||||| ||                                                                                                                       
ATGAGGGAG        TTATA GA                                                                                                                      
         ACAAGGTG     -  CAGAGAAAAAATTTTATAAAAACAAGGTATAATAGACAGTAAAATTTAAAGGTTATGACGTAATTTACGTAAAAAAGGACAAAATTGGAATAATTAAGTTGATATTTATAATTGAGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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