Plant MITE

SE3520632

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6850
Mimulus guttatus
SE3520632
Mutator
M6
scaffold_8:8051418-8051588
GTATTTCAA
AGGGTTTT

Secondary structure and sequence

TSD TIR

5'

3'

GTATTTCA G      ATCT          C       GT           AT           ------------   C          AAT
        A GGTTTT    ATCCTACACC GGTGAAG  TACACCGGGTG  TTTTTACCGTT            GAT TACACATACC   
        | ||||||    |||||||||| |||||||  |||||||||||  |||||||||||            ||| ||||||||||    
        T CCGAAA    TAGGATGTGG CCACTTT  ATGTGGCCCAT  AGAAATGGTAA            TTG GTGTGTGTGG   
 AACTTTA G      ACTC          C       --           CT           GTATATGTGTGT   T          GTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520632

GTATTTCAAGGGTTTTATCTATCCTACACCCGGTGAAGGTTACACCGGGTGATTTTTTACCGTTGATCTACACATACCAATGTGGGTGTGTGTGTGTTTGTGTGTATATGAATGGTAAAGATCTACCCGGTGTATTTCACCCGGTGTAGGATCTCAAAAGCCGTATTTCAA

Copy Cancel