SE3550633

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6851
  • Mimulus guttatus
  • SE3550633
  • PIF/harbinger
  • To5
  • scaffold_14:19840346-19840738
  • TAG
  • GGGCAATGTTTGGTTATGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA             TTA     TT      TTTTTATTGATTCCCCAAAACAAAATTACATTTATTACACTTCTCAAATAATTTTCTCAAAACAATCTCAAAAGTTTCTCTCTCCTTCAGACATGATGTGACTGCTACAGTAAAATGATTTGACTGGTACAGTAAAAAATGTCTTCACTAAAAAACAAAGAAATAT
  GGGCAATGTTTGG   TGTTT  ATTTTG                                                                                                                                                                      
  |||||||||||||   |||||  ||||||                                                                                                                                                                      C
  TCCGTTACAAACC   GCAAA  ACTTTG                                                                                                                                                                      
GA             TTC     --      AATAAAACTAAAGTAAAACTCCTTTATACAAAACCCCCTTCTTAAACTCTTACTTTCATTATAAACAAATATAAAACCTTCCTTTGTTTTATGTGACATCGTCAGTGTAGTACAAATTTTTATAATCTTTTTACATAAAATCTTCTTTTTTTAACTTTCTACTTCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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