Plant MITE

SE3520634

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6852
Mimulus guttatus
SE3520634
Mutator
M19
scaffold_13:5780997-5781750
AAAAGATAT
TGGCTTAATTCCACTTTGCACCCTTGAAATATACCATTTTGGCACTTTGCACCCTCGAAA

Secondary structure and sequence

TSD TIR

5'

3'

AAAAGATA                                                            AATAA                    A   C            T  C              T   T ---    ---  GCAATTTTATTTTTCATTGGTGTTTTTCTTTTTGGGGTACAAAATAAAAAAAAAATTGTTGTTTTCTTGAACCTCAAACCTAATTTCGAGCGGATAAAGTGCGAAAAAATAAAAATTACACCGGATTATTTAAAAAAAAAACTACATTATCTTACAAAAGAAAAATAAAAAAAATAATCTTTTATCACTAAATTATTCGATTGTGGATCTTTTATGTCACTGTTTGTAAAATATT
        TGGCTTAATTCCACTTTGCACCCTTGAAATATACCATTTTGGCACTTTGCACCCTCGAAA     TAATAGCACTTTGCACCCTC AAA ACAATAAATCAT CA AATGCACCCTCAAT GAA A   ATAA   AG                                                                                                                                                                                                                                           
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||| ||| |||||||||||| || |||||||||||||| ||| |   ||||   ||                                                                                                                                                                                                                                            
        ACCGAATTAAGGTGAAACGTGGGAACTTTATATGGTAAAACCGTGAAACGTGGGAGCTTT     ATTATCGTGAAACGTGGGAG TTT TGTTATTTAGTA GT TTACGTGGGGTTTA CTA A   ATTT   TT                                                                                                                                                                                                                                           
TATAGAAA                                                            ATTTA                    C   A            C  A              -   - AAA    CGA  TTTTATATTTAAATTATAAACATCACTATAAAAAAATCTTACGGTTTACAGTTTATAAAAAAAATAAGTAGTTAGTAAAACTTTGATATTTCAAGTTTTTATTTTTATGTAAGGTAGTTGTATAAATTTTTAATATAACAAAATAGTTTTATTTTATAAAATGCTTTTTTTTAGTAAGTCGATAATGCAATAGTTCAATAGACTTTTAATAAAAAAGAAGGTTTATAAAAGTGGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520634

AAAAGATATGGCTTAATTCCACTTTGCACCCTTGAAATATACCATTTTGGCACTTTGCACCCTCGAAAAATAATAATAGCACTTTGCACCCTCAAAACACAATAAATCATTCACAATGCACCCTCAATTGAATAATAAAGGCAATTTTATTTTTCATTGGTGTTTTTCTTTTTGGGGTACAAAATAAAAAAAAAATTGTTGTTTTCTTGAACCTCAAACCTAATTTCGAGCGGATAAAGTGCGAAAAAATAAAAATTACACCGGATTATTTAAAAAAAAAACTACATTATCTTACAAAAGAAAAATAAAAAAAATAATCTTTTATCACTAAATTATTCGATTGTGGATCTTTTATGTCACTGTTTGTAAAATATTAGGTGAAAATATTTGGAAGAAAAAATAATTTTCAGATAACTTGATAACGTAATAGCTGAATGATTTTTTTTCGTAAAATATTTTATTTTGATAAAACAATATAATTTTTAAATATGTTGATGGAATGTATTTTTATTTTTGAACTTTATAGTTTCAAAATGATTGATGAATAAAAAAAATATTTGACATTTGGCATTCTAAAAAAATATCACTACAAATATTAAATTTATATTTTTTAGCTTTAAAAAATCATTTGGGGTGCATTATGCATGATTTATTGTATTTCGAGGGTGCAAAGTGCTATTAATTTATTTCGAGGGTGCAAAGTGCCAAAATGGTATATTTCAAGGGTGCAAAGTGGAATTAAGCCAAAAGATAT

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