SE3530635

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6853
  • Mimulus guttatus
  • SE3530635
  • hAT
  • Hat10
  • scaffold_11:14400309-14400958
  • GGTGGAAC
  • CCAATGTAGTCAAAATCG

Secondary structure and sequence

TSD    TIR
5'



3' 
GGTGGAA    T             -     TAA  CGTAAAATCGTAAGACTTTAAGATTTTACACACTGTAAAGGAGTAAGATCGCACTAAAATTGCAGGTGCCTTAAAATCGTGTGAAATCGCATTCAAAATCGTTAAAAACGCGATTTTAGTGCGATTTTGGCGATTTTGGTTTTTGTCAAGAATTGGGCTGAAATTTTGGATTTTGGCCTCATAAATGCAGTTTTTTAACTAAATGTTTTTAGCCAATTACCAAATAATCCAGAATATATAAAGCTCGGCCCTGCCCTAAAATAACAATCTATCACGACGAGAAGAAAATAC
       CCAA GTAGTCAAAATCG AGATC   AT                                                                                                                                                                                                                                                                                                   
       |||| ||||||||||||| |||||   ||                                                                                                                                                                                                                                                                                                    
       GGTT CATCAGTTTTAGC CTAAA   AT                                                                                                                                                                                                                                                                                                   
CAAGGTG    C             C     ---  TCACTTTAGCCTCTCCCCATCATTTTAGCCTTTGCATTTTAGCCTAGCATTTTAGCATTCTGAAATGTACATAACATTTTATTTATATAAATCATGAATGATGAATCTTTTAGGCATTGTGTTTATGTTATTCAGTATTATATGTATTTTATACAGGATTGTTTATATATTGTAGGGTTGTAATTGTTTTGCACAAAATTGTAATTAATTTGTATCAGATTGTATTTAACACAATCCTCTATTGACTTTGACTGTGAGTGTTGGCGACCTATAAAAAAATCGTCTTCTCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3