SE3510637

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6855
  • Mimulus guttatus
  • SE3510637
  • Tc1/Mariner
  • St1
  • scaffold_9:8192837-8193102
  • TA
  • TACTCCCTCCATTCCATTTTAATTATCTTTTTGGG

Secondary structure and sequence

TSD    TIR
5'



3'
              CA        A          -CTAATTCACA   A    GAAAACT         G   ---   T    --   ---AAA    AATAAAATGACTAAAAAACCACTTTTATTAAATGTTTAACC
TACTCCCTCCATTC  TTTTAATT TCTTTTTGGG           CAT TTAA       AATAATTGT CAT   GGA TCTA  GAA      TCAT                                         
||||||||||||||  |||||||| ||||||||||           ||| ||||       ||||||||| |||   ||| ||||  |||      ||||                                         A
ATGAGGGAGGTAAG  AAAATTAA AGAAAGATCT           GTA AGTT       TTATTAACA GTG   TCT AGGT  CTT      TAAC                                         
              AC        C          CTAAAAAAAAA   A    -------         -   AAA   T    TA   CATAAA    ACAAAAGAGTTGATACTGGAATGATGATAATTCTCTTAATT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End