SE3530638

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6856
  • Mimulus guttatus
  • SE3530638
  • hAT
  • Hat1
  • scaffold_10:5908583-5909289
  • ACAATAGG
  • TAGGGATGGCAATGG

Secondary structure and sequence

TSD    TIR
5'



3' 
ACAATAGG               GTA  GGTTTGGCGGGTCTTGCACCCGGAACCGACCCGTTTGGGGCGGGTCTGGGTCAGATAAATGGTTTTGGGTCGGGTAATGAGTTTAAGTTTTTAGAACCGGATGGTTCTGGGTCGGGTTACAGGTCTTATTGGAACCGACCCAGCACCGACCCGTATATATATATATATATATATATATATATATATAATTTCAGGTTTCATTTATCAAACTATCAATTTCCATCTTGTCTATTCTCATTTACCTATTTTCACTGTTTTATTTTTCGAATTTTATTTTTCGTGAGTAATATTTATCACTTGTCAACCACCGCTAATTGTCTTGCAT
        TAGGGATGGCAATGG   CG                                                                                                                                                                                                                                                                                                                                     
        |||||||||||||||   ||                                                                                                                                                                                                                                                                                                                                     T
        ATCCCTACCGTTGCC   CC                                                                                                                                                                                                                                                                                                                                     
GGATAACA               AAG  AAAACCCAGCCCAAACGGATTTGGGTTCTGGGCTGGATGCTTTTTATATATTTATGTTCTGGGCGGGGTTGGGCGAAATCGAATCTGGGTCTGGTCGGGGTTGGGTCTGGGATTGATTTGCCAAGACTAGGCGGTCTGGGCGATCTGGGTAATTGTATGTTTTTCAAATTATAAAAAATTGAAAGTATTGTAAAACGAACATATAAAAAATGCTTTATTAGAGTTATGATTTTATGTTATAAAATTTTTAAGAGATGTTCACTGTATTGTACTTGTTATTTTAATGTTAATTAATATAAATTGAAGCTATTATTCATTTTAAGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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