Plant MITE

SE3550641

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6859
Mimulus guttatus
SE3550641
PIF/harbinger
To2
scaffold_7:3737642-3737861
TTA
T

Secondary structure and sequence

TSD TIR

5'

3'

      -- CCATGATTAACTAAATAATTGGACTTTGTTTGATTTTTGGTATCCCTAACAACTTGCCGGGTCGACGCTCAAATACTATGTTGTCATGGTCTTATCTTGACTT
   TTA  G                                                                                                       
   |||  |                                                                                                       C
   CCG  G                                                                                                       
ATT   GA CAAACCAACGGTTCTATTCTAATCGGTTCTATTCTAATTTATTAGATGATATTTGGGTTAATATAATATCCTGTAAGCTACTAAGTTATTTGTTGGTACAGAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3550641

TTAGCCATGATTAACTAAATAATTGGACTTTGTTTGATTTTTGGTATCCCTAACAACTTGCCGGGTCGACGCTCAAATACTATGTTGTCATGGTCTTATCTTGACTTCTAGACATGGTTGTTTATTGAATCATCGAATGTCCTATAATATAATTGGGTTTATAGTAGATTATTTAATCTTATCTTGGCTAATCTTATCTTGGCAACCAAACGAGGCCTTA

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