SE3550643

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6861
  • Mimulus guttatus
  • SE3550643
  • PIF/harbinger
  • To3
  • scaffold_14:9925143-9925514
  • TAA
  • AGAGCAACTCCAATGGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                -  --GAACC                TACAA     CCATTTTGATTCCCTAAAGTGAAAATATTTCACTCAAATTGAGGCATTAAAGTGGTAGTTAATTTGATACTCAATCTCCTAGAGGTGCAAAAATGCACCCAAAAAAAGAGGAACCAAATATACCTTAAAAATAGC
  AGAGCAACTCCAATGG GA       AAATGAAGTATTAAAT     AACTA                                                                                                                                       
  |||||||||||||||| ||       ||||||||||||||||     |||||                                                                                                                                       T
  TCTCGTTGAGGTTATT CT       TTTACTTCGTAGTTTG     GAGTT                                                                                                                                       
AA                T  ACATAAT                ----T     AACCCCGAACTCTATTATGAAACTATAAGAATTTTTTGAGTATACGAGGTTGAGTATCCGTAATTTATTTAATAATAAGTAAAAAGTAACTTTAAATAACTCTAAAATAAATTGAAAAAGGCAACTTAAACGATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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