SE3530644

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6862
  • Mimulus guttatus
  • SE3530644
  • hAT
  • Hat31
  • scaffold_5:21376974-21377699
  • GTCACTGT
  • CACTGTTAGGGCTGGCAATCGGGC

Secondary structure and sequence

TSD    TIR
5'



3'
GT  C  -              C         A  CCGAGCTTGGGTTGGCTCAAGCTCACATACCATCGGGCCTCGTTATTATAGGCTCAAGCTCACATGTCATCGGGCCTCATTAGAATAGGCTCAAGCTCCGCTCATGTATTTTTTCGGGTTTCGGGTTTATATCGGGCCCCATTAATATATAATTGTAATAAATAATTTTTTTTTTATAAAAATAAGTGATGAACAAGATTTACCTCCATTGAAGCTAATAAAAAAAAAACCTAAACGATCATTGAAAGTTATTGGAAAAACATGAAAATAAAACCGAAAGAAGTAAAAAAAAATTAGTAACTCTTATTATTGGAAACATTTTATATTCT
  CA TG TTAGGGCTGGCAAT GGGCCATGT AG                                                                                                                                                                                                                                                                                                                                         
  || || |||||||||||||| ||||||||| ||                                                                                                                                                                                                                                                                                                                                         C
  GT AC GATCCTGGCCGTTA CTCGGCCCG GA                                                                                                                                                                                                                                                                                                                                         
 T  C  T              A         -  TTGGTTTCGGGCTATCGAGCCGGGCTAATATAAACTCGGCTCGGATGGAAAATCACTCGGCCCGGCTAAAACTCGGTAAAATGATTTGGGCTAAATAAATACTCGGCTCAAACTCGGATGATACCGAGTTGGGCTTATTCCGGGCTGGCTAATCCTATTATTATTTTATATATTATATAAATAATAACATTATGATACTGAGCTGTATGTTCAATACTGGCTTATTCTAATGGACTAAAACGCTTCTTTTTTCAGTTTTATTTTCCTTAATTCATCACTGCCACCGTTATTCAATTTATACTTAGTTTACGTTGTAGAGTGGCTCTAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End