SE3550646

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6864
  • Mimulus guttatus
  • SE3550646
  • PIF/harbinger
  • To7
  • scaffold_5:8672195-8672565
  • TTA
  • AGAGCAACTCCAATGGGAGTATCAAATGGATTATCAAATCCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               -G          --             - -   -------AAA    CTT  ---   TATTCCAAAATTAAAATTTTCCACTCCAATGGGAGTATCAAAGTGGGTAAGTATTTTGATATTCTACCTCTTTGAATGTAAAAATACATCCCGGAAATTGAGTTATCAAAAAAATAACT
  AGAGCAACTCCAATG  GAGTATCAAA  TGGATTATCAAAT C CAT          CCAC   TT   TGA                                                                                                                       
  |||||||||||||||  ||||||||||  ||||||||||||| | |||          ||||   ||   |||                                                                                                                       A
  TCTCGTTGAGGTTAC  TTTGTAGTTT  ACCTAATAGTTTA G GTA          TCTA   TT   AAC                                                                                                                       
AT               GA          TA             T A   AACTATTAAT    ---  ATA   TTATAAATAAATGTTAAATAGATGAGGTTGGTACCAATAGATTTAGTTATTAGTTAACCTTCAAAAAATCACCAAAATAAACATTAACGGTACACAGTAAAACACTAACCCACAAATAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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