Plant MITE

SE3530648

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6866
Mimulus guttatus
SE3530648
hAT
Hat9
scaffold_14:9550252-9550797
CCGACTAT
CAGGGCCGGTTCTGAGGGGAGGC

Secondary structure and sequence

TSD TIR

5'

3'

CCGACTAT        G       -----   A   GAAG       ---   ----------CCTA      CC   -   TTTACAAAATTAAGGGCCCCCAAATTTTTATTATATCCTTTATATATTAGTATTTTTTCAAACAAAAGTATATTATATATATAATTATCGAGAACCCTAATTGATAAATAGATATTGATAAACGTTTTTACTTGTTTGTATAATTTTTCTAATTATGGGGCCCCCAATTATTAAATTTATAGTGCATTAGATATTTATTTTTA
        CAGGGCCG TTCTGAG     GGG GGC    TAGGCGG   TCG              GGGCCC  GAT TTT                                                                                                                                                                                                           
        |||||||| |||||||     ||| |||    |||||||   |||              ||||||  ||| |||                                                                                                                                                                                                            
        GTCCCGGC AGGACTC     CCC CCG    ATCCGCT   AGC              TACCTC  GGG AGA                                                                                                                                                                                                           
TATCAGCC        A       TAAAA   -   --GG       CTA   TTCTATCAACTTTT      --   A   TGTTACATGCAATTTTGAGTAAAAAAAGGTTTTACTATTATTTAAGATACAATTGGGCAAAAAAGACATTCTACATATCGATCTCCGTTCCGATATTTAAAAACTATGTCACTACAATATCAAAAGCCCCCAAGCCCCCGTCGCGGGGGCTAAAAAAAATTCCTATTAAAAGTAATTTATCGTGACTTTGGTCACATTTATAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3530648

CCGACTATCAGGGCCGGTTCTGAGGGGAGGCGAAGTAGGCGGTCGCCTAGGGCCCCCGATTTTTTTACAAAATTAAGGGCCCCCAAATTTTTATTATATCCTTTATATATTAGTATTTTTTCAAACAAAAGTATATTATATATATAATTATCGAGAACCCTAATTGATAAATAGATATTGATAAACGTTTTTACTTGTTTGTATAATTTTTCTAATTATGGGGCCCCCAATTATTAAATTTATAGTGCATTAGATATTTATTTTTATATATTTACACTGGTTTCAGTGCTATTTAATGAAAATTATCCTTAAAAAAAATCGGGGGCGCTGCCCCCGAACCCCCGAAAACTATAACATCACTGTATCAAAAATTTATAGCCTTGCCTCTAGCTATACATCTTACAGAAAAAACGGGTTAACATAGAATTTATTATCATTTTGGAAAAAAATGAGTTTTAACGTACATTGTAGAAGGGCTCCATTTTTCAACTATCTTCGAATCTCGCCTAGGGCCCCCAAAATCTCAGGAACGGCCCTGCCGACTAT

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