Plant MITE

SE3520649

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6867
Mimulus guttatus
SE3520649
Mutator
M26
scaffold_3:15916090-15916351
TTTATCCAA
AAGGGAGCGGCTAAAACAAATACCGGTTTTTTCTTACTTCAATACCAACAACATAAAAATAAAAAA

Secondary structure and sequence

TSD TIR

5'

3'

TTTATCC                         GT                    A   CAT      -      TTAATAGAT                 AA  T              A     A       CAA
       AAGGGAGCGGCTAAAACAAATACCG  TTTTTCTTACTTCAATACCA CAA   AAAAAT AAAAAA         AATAAATAGGTAATGAC  TA TACCCTTAATGAAA TCAAT TCACACA   
       |||||||||||||||||||||||||  |||||||||||||||||||| |||   |||||| ||||||         |||||||||||||||||  || |||||||||||||| ||||| |||||||   A
       TTCCCTTGCCGATTTTGTTTATGGC  AAAAAGAGTGAAGTTATGGT GTT   TTTTTA TTTTTT         TTATTTATCCATTACTG  AT ATGGGAATTATTTT AGTTA GGTGTGT   
AACCTAT                         AG                    G   ATC      C      ---------                 CA  T              -     C       TTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520649

TTTATCCAAGGGAGCGGCTAAAACAAATACCGGTTTTTTCTTACTTCAATACCAACAACATAAAAATAAAAAATTAATAGATAATAAATAGGTAATGACAATATTACCCTTAATGAAAATCAATATCACACACAAAATTTGTGTGGCATTGATTTTATTAAGGGTATTAACGTCATTACCTATTTATTTTTTTTCATTTTTCTATTGGTGGTATTGAAGTGAGAAAAAGACGGTATTTGTTTTAGCCGTTCCCTTTATCCAA

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