SE3530650

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6868
  • Mimulus guttatus
  • SE3530650
  • hAT
  • Hat9
  • scaffold_9:686859-687312
  • CCTTGGCC
  • GGCCCAGTGGCGGAGCCACCCTTTGGCAAGGGTGGGCTCCAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
CCTT    ----              -CCC     -CA          CC   CCACTCTCATTATTTAAAAATT       TAT TTATATCTATATATTATTAGCCCCACAAATAGTTTAATTTAGCCCACCAAAGTAATTTAGTTTAGCTTATCTATCAAAAAATTTATGTTATATTAGTTGAAGTTTATAATTTGTGGTTATTTTATGCTATTTTATGTTAATGAATATAAAAAA
    GGCC    CAGTGGCGGAGCCA    TTTGG   AGGGTGGGCT  AGC                      TATACTA   A                                                                                                                                                         
    ||||    ||||||||||||||    |||||   ||||||||||  |||                      |||||||   |                                                                                                                                                          
    CCGG    GTCACCGCCTCGGT    AAGCT   TCCCACTCGA  TTG                      AGCCCCC   G                                                                                                                                                         
        TTCC              CCTT     CTG          -A   ----------TAATTGCCCCCA       --- TCGCGGGGGCTAAAAAAAAAACCCTAAGTAAATGTATTTTTATATCGTGTTTTATTGATGTTTAAATATTTGAATTTGATTATATTCGATATGATTTAATGAACCCACCCACCCGAATTGTAACTGCCCCCAAGCCCCCGTCGCGGGGGCTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3