SE3520652

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6870
  • Mimulus guttatus
  • SE3520652
  • Mutator
  • M35
  • scaffold_1:5309288-5309548
  • TTTAGAATA
  • ATGGGTTTATTGCATATAGCACCCTTGTATT

Secondary structure and sequence

TSD    TIR
5'



3'
TTTAGAAT            C  A   C           TACTCT      A      C   C   --A              C  TCC  -     ATTAA     A     AA  T     --AT    AC
        ATGGGTTTATTG AT TAG ACCCTTGTATT      AATTGT AAAAGA TCC CGT   ATAAATATTAGCAA GT   CC TATGA     TTTTT TTAGC  AC ACCCC    ATAA  
        |||||||||||| || ||| |||||||||||      |||||| |||||| ||| |||   |||||||||||||| ||   || |||||     ||||| |||||  || |||||    ||||  G
        TGCTCAAATAAC TA ATC TGGGGACATAA      TTGACG TTTTTT AGG GCA   TGTTTATAATCGTT TA   GG ATACT     AAAAA AATCG  TG TGGGG    TATT  
TATAAGAT            A  A   A           TATAAC      A      T   A   CAA              T  TTA  T     -ACTA     A     CG  T     GATT    AC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End