Plant MITE

SE3550653

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6871
Mimulus guttatus
SE3550653
PIF/harbinger
To2
scaffold_8:18088195-18088431
GTA
GGCCCCGTTTGGTTGCCAAGATAAG

Secondary structure and sequence

TSD TIR

5'

3'

GTA               C         CCGAAATTAAC         -----          TGATGT    TATCCCCAATAAATTGCCGGGTCGACCCGCCAAAATTATATAATCATGGCTTATC
   GGCCCCGTTTGGTTG CAAGATAAG           TAAATAGTT     GGACTTAATT      TTGG                                                       
   ||||||||||||||| |||||||||           |||||||||     ||||||||||      ||||                                                        
   CCGGGGCAAACCAAC GTTCTATTC           ATTTATCAG     TTTGGGTTAA      AAAA                                                       
ATG               C         ---------TA         ATTAC          -----T    TAACCTCGAGCGTTGTAGGTTGTTTTTTTTGTGTGAGCTTCCGTTCTACTCCGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3550653

GTAGGCCCCGTTTGGTTGCCAAGATAAGCCGAAATTAACTAAATAGTTGGACTTAATTTGATGTTTGGTATCCCCAATAAATTGCCGGGTCGACCCGCCAAAATTATATAATCATGGCTTATCTTGCCTCATCTTGCCTTCGAGTGTGTTTTTTTTGTTGGATGTTGCGAGCTCCAATAAAATAATTGGGTTTCATTAGACTATTTAATCTTATCTTGCCAACCAAACGGGGCCGTA

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