Plant MITE

SE3530654

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6872
Mimulus guttatus
SE3530654
hAT
Hat11
scaffold_9:1215824-1216452
CTCAATAG
AGTAGGGGTGCAAGTTGGA

Secondary structure and sequence

TSD TIR

5'

3'

CTCAAT          C        A    TT          CG    --          AAAATTTCCGATTTTGGAACAACTTTTTTCATTCCGACTTCCGAAATTCCGATTTCCGAATTTTTCCGATTTTTTTGGATTGGAATTGGAATTATATGAAATAAATTTGGAATTTCCGATTCCGAAAAATACACCTATAAATAGTATATATTATATAATACTTATTTCCCGAAAAATACACCTATAAGTTTTGTTTTAGGATCTTGACGTAATGTATTGTTGTTAGAAATTTTATTGGATATTATGATGCGTTTATTT
      AGTAGGGGTG AAGTTGGA CGGA  TTCCAATTTC  CCGG  TTCCGATCCG                                                                                                                                                                                                                                                                  
      |||||||||| |||||||| ||||  ||||||||||  ||||  ||||||||||                                                                                                                                                                                                                                                                   
      TCATCCCCAC TTCAGCCT ACCT  AGCCTAGCCT  TAAT  TAAAAGCCTT                                                                                                                                                                                                                                                                  
GATAAC          T        -    --          --    CG          TTAAAGGTTTTTAAAAGCCTTCATGTTTTAGTTAAGGTTAAGGTTAAGGTTTTAAAAGCTTTAAATTTTTAAGTAAGGTTAAGGTTTTCTGAGCCTTTAAAGCCTTAAAGCCTTTTTTTAGCCTTTAGTGTATTCGAAATTTTAAAGTTTTGAATCGGCTTTAAAAGATTTTACAAGTATTAAAAAGCTTTTATTCTCGTAGGTGCAGCTATTTTCATTTTGATTATTGATGATTTAAAGTCAATTTTTTTTATTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3530654

CTCAATAGTAGGGGTGCAAGTTGGAACGGATTTTCCAATTTCCGCCGGTTCCGATCCGAAAATTTCCGATTTTGGAACAACTTTTTTCATTCCGACTTCCGAAATTCCGATTTCCGAATTTTTCCGATTTTTTTGGATTGGAATTGGAATTATATGAAATAAATTTGGAATTTCCGATTCCGAAAAATACACCTATAAATAGTATATATTATATAATACTTATTTCCCGAAAAATACACCTATAAGTTTTGTTTTAGGATCTTGACGTAATGTATTGTTGTTAGAAATTTTATTGGATATTATGATGCGTTTATTTTTTTTATTTTTTTTAACTGAAATTTAGTAGTTATTAGTTTTACTTTTATCGACGTGGATGCTCTTATTTTCGAAAAATTATGAACATTTTAGAAAATTTCGGCTAAGTTTTGAAATTTTAAAGCTTATGTGATTTCCGATTTTTTTCCGAAATTCCGAAATTTCCGAGTCTTTTGGAATTGGAATGAATTTTTAAATTTCGAAAATTTTGGAATTGGAATTGGAATTGATTTTGTACTTCCGAAAATTTTTGGAAATTTTCCGAAAATGCTAATTCCGATCCGATCCATCCGACTTTCACCCCTACTCAATAG

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