SE3520656

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6874
  • Mimulus guttatus
  • SE3520656
  • Mutator
  • M21
  • scaffold_14:8476453-8476895
  • ATTCCATAT
  • ATATGGGATGTGATAAATGTCGTTCGAGCTTTAATAATACTGTTACGACTTCAAATGTGATTTTGATCATTTTTA

Secondary structure and sequence

TSD    TIR
5'



3'
ATTCC         G   -----         -     GC    A    AC    AC      AA  G          -C       AATTCAAA   T      CC     -AA       T     ATTC  A            A             AC            T  GAC  G   TA   A     ATCA    ATACT   C   AC     TGTATT  GG
     ATATGGGAT TGA     TAAATGTCG TTCGA  TTTA TAAT  TGTT  GACTTC  AT TGATTTTGAT  ATTTTTA        TTT GTAAAA  CGAAA   GAGAATT GTAGT    TG GTTAGTTTTCTA TCCAACTTGAATC  CAAAATTGGATG CG   GA AAA  TAT CATGA    ATGA     GTC ACA  TTTGA      GA  
     ||||||||| |||     ||||||||| |||||  |||| ||||  ||||  ||||||  || ||||||||||  |||||||        ||| ||||||  |||||   ||||||| |||||    || |||||||||||| |||||||||||||  |||||||||||| ||   || |||  ||| |||||    ||||     ||| |||  |||||      ||   
     TATACCTTA ACT     ATTTACAGC AAGTT  AAAT ATTA  GCAA  CTGAAG  TG ACTAAAACTG  TAAAGAT        AAA CGTTTT  GCTTT   CTTTTGA CATCA    AC CAATCGAAAGAT AGGTTGAATTTAG  GTTTTAACCTAC GC   CT TTT  ATA GTACT    TACT     CAG TGT  AAACT      CT  
              G   TTACA         T     -A    G    CA    AA      CA  G          TA       -AAAACCA   C      AA     GTG       -     GGAA  C            A             GC            T  ATA  G   CA   C     ----    -----   -   -A     TAAAAT  AT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End