Plant MITE

SE3550659

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6877
Mimulus guttatus
SE3550659
PIF/harbinger
To8
scaffold_1:4789271-4789595
TTA
AGAGGGTGTTTGGCTAAGCTTAT

Secondary structure and sequence

TSD TIR

5'

3'

TT                       -AAG       -  -    TATAAGCTCTTCCAAAGTGTTTGGTAAATTTTTAAAAAAAGATCTTATTTTTTTAAAAAATAAGCTGTTGGAGACCAAATAAGATCTTTTTAAATAAGTACCTCTACCCCACCTTTTTAT
  AGAGGGTGTTTGGCTAAGCTTAT    ATGTTTT AG AGCT                                                                                                                        
  |||||||||||||||||||||||    ||||||| || ||||                                                                                                                         
  TCTCCCACAAACCGATTCGAATA    TTGTCGA TA TCGA                                                                                                                        
AT                       AAAT       C  T    GAATGTAGACTATTCTACAAAAATCTCGACTATTCGACAATGCAGAATAAAAATCCTAATTAAAAATATCACAAACCTATTACTCGAATAAAGGATAAAAATGAGTAATATTCTAGAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3550659

TTAGAGGGTGTTTGGCTAAGCTTATAAGATGTTTTAGAGCTTATAAGCTCTTCCAAAGTGTTTGGTAAATTTTTAAAAAAAGATCTTATTTTTTTAAAAAATAAGCTGTTGGAGACCAAATAAGATCTTTTTAAATAAGTACCTCTACCCCACCTTTTTATTTAAGATCTTATAATGAGTAAAAATAGGAAATAAGCTCATTATCCAAACACTATAAAAATTAATCCTAAAAATAAGACGTAACAGCTTATCAGCTCTAAAAACATCTTATCAGATGTAAGAGCTTATCAGCTGTTTAAAATAAGCTTAGCCAAACACCCTCTTA

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