SE3530660

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6878
  • Mimulus guttatus
  • SE3530660
  • hAT
  • Hat30
  • scaffold_3:13120226-13120572
  • CCTCCAAC
  • CAGGGCCGGCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
CCTCCAAC            A  -   ATATGGGGCTCTTGGCAAATATTTTTTTTGGGGGCCCTTATATTAATGTTTTAATTTAAAATTAAATATATTTTTGGTATTTTCTTATTATTTGAAGTGGAAATATTAAAATTATTAGATGATATGTTATATTTTCTACAATTTGGC
        CAGGGCCGGCTC AG CCC                                                                                                                                                   
        |||||||||||| || |||                                                                                                                                                    
        GTCCCGGCCGAG TC CGT                                                                                                                                                   
CAACCTCC            A  A   ATCCGTTGAATACGGATACGGATCCCGGGGGTTTGATAAACATTATAAGTATCCTGGGGGATTTAATACACATAATATTTAATCCCGGGGGTTTAAACTTTATAAAAAATATAAAAGTATTTTGATTTGTTTTTATAAATATATTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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