SE3530661

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6879
  • Mimulus guttatus
  • SE3530661
  • hAT
  • Hat22
  • scaffold_7:9312294-9312905
  • ATTAACAC
  • CAATGTTGTTAGAACTGGACCG

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTAACAC       G          A   AATCGGCC     -    -   TCGACCGTAACCCGGCAATAAAGCGGTCCGATCTGACATCTAAAATTGGAAAAATCGAAAACCGGGGTCAAATGAGCAAAATCCGGTTCGACCAGGTAAAAACCCGAGAACCGACGAGTCAGTCAAGGAACCCGATTTTCGGCCAAAACGTCTCACATCACCGCTGAGTTGGTTATTTGTGGCTAGATTTGAGCGAACCTTGACAGACTTAGTAGTGGATGGCCGGATCTAGTCATGAGTGATCGAAAGATTGTTGGA
        CAATGTT TTAGAACTGG CCG        GGTCG GACC GGT                                                                                                                                                                                                                                                                  
        ||||||| |||||||||| |||        ||||| |||| |||                                                                                                                                                                                                                                                                  T
        GTTACAA AGTCTTGGCC GGC        GATAT TTGG CTG                                                                                                                                                                                                                                                                  
CACAATTA       A          C   -------C     C    C   CTAGTAAACCCAGTACCCAAATATCCCAGCTTGGCCAAGTTGGCCCAAAAACTAAAAAAATTATACGGTAATAAAATAATTAAAATTACAAATTTTTATAATAAAAGAAATATAAAAATTAGAGGGTGAATAATAAAATTGAAAAATAGATGAAGTAGAGTGAAAAATGATATAAAATAACGAACATGAGATATAAAAAAGTAAAAAATAAGAAGATTAGGCCGTTAGCCGGTGGGGATAAGCTAATGAGTACTGGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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