Plant MITE

SE3530662

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6880
Mimulus guttatus
SE3530662
hAT
Hat8
scaffold_9:442840-443464
TTTAAAAC
TTTAAAACCAAGGTTCTAAA

Secondary structure and sequence

TSD TIR

5'

3'

        AC  AG        ---------      -   TCGGGTACGTGGCGGTTAGGGACCGCCACACGATCAATCGGCGCGGCGGTGATTTATCGGAGATAAATCGGAAATATATCGGTTTTTAAATTTAGTGTAATATATTTCTAAATATTATTTGTAAATACTCAAAATATATATAAAAGAATATTTAAACATAATTCTATCCTATCATTCATATTTTATTATATAATTCTAATTACTCAATAAATAACAAAAATTTAAAAACAATAAGATCATAATATAATAAAAGATTCTTACGAAATACAAATACCAGA
  TTTAAA  CA  GTTCTAAA         AGGCGG TTA                                                                                                                                                                                                                                                                                      
  ||||||  ||  ||||||||         |||||| |||                                                                                                                                                                                                                                                                                      C
  AAATTT  GT  CAAGATTT         ACCGCC GCT                                                                                                                                                                                                                                                                                      
CA      --  CA        ATAGCCAGC      A   ATATAGCCGGCGGTATAGCCATAGCCAATATTTGGAAATGCTAAAACAACTCCGCCAAACCTTATAGCCAAAAAATGCCGCTCCGCCAAAAAACCGCCCAGTTTGGCTATATAGCCAGTTGTTTAGCCAAAAAAAAAAAAAAAAATAAATTTAATTTTACTTTTATACAAAACTAAAAAACAAAAAGAGGTTAAGAAAGTTGAAGGTTTTGGTTTGGTTCATGATGGGGCGTTAAATACAAAACAACACAAATATAATTAACAACTACGCTTTCTGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3530662

TTTAAAACCAAGGTTCTAAAAGGCGGTTATCGGGTACGTGGCGGTTAGGGACCGCCACACGATCAATCGGCGCGGCGGTGATTTATCGGAGATAAATCGGAAATATATCGGTTTTTAAATTTAGTGTAATATATTTCTAAATATTATTTGTAAATACTCAAAATATATATAAAAGAATATTTAAACATAATTCTATCCTATCATTCATATTTTATTATATAATTCTAATTACTCAATAAATAACAAAAATTTAAAAACAATAAGATCATAATATAATAAAAGATTCTTACGAAATACAAATACCAGACAAGTCTTTCGCATCAACAATTAATATAAACACAACAAAACATAAATTGCGGGGTAGTACTTGGTTTGGTTTTGGAAGTTGAAAGAATTGGAGAAAAACAAAAAATCAAAACATATTTTCATTTTAATTTAAATAAAAAAAAAAAAAAAAACCGATTTGTTGACCGATATATCGGTTTGACCCGCCAAAAAACCGCCTCGCCGTAAAAAACCGATATTCCAAACCGCCTCAACAAAATCGTAAAGGTTTATAACCGATACCGATATGGCGGCCGATATATCGACCGCCACGACCGATATTTAGAACACTGTTTAAAAC

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