Plant MITE

SE3520663

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_6881
Mimulus guttatus
SE3520663
Mutator
M29
scaffold_9:576738-577305
CTGTAATTA
TAATTAGAGTCGTGCTATTTCCACCTCCAAAGTATCTCAATTCACCACCAA

Secondary structure and sequence

TSD TIR

5'

3'

CTG      ---   T                C          CAA           -------------   ----  ATAAAATGTCATAAATACCCCTCAAATTTATAATCCACCACCCTTCCTTATATTCACTTAATCCCCCGTGTTCTAAGTTATTTCTATTTTTTTCAATGAAATATTTATTAGAAGATATTAAAACTTCCATATCAGATGATCTACAGATATGTAATTCTTTTTCTTAGGAAATAAAATTATATTAAGCCAAACTGGCAAATTTCGGAGGATGTTAAG
   TAATTA   GAG CGTGCTATTTCCACCT CAAAGTATCT   TTCACCACCAA             ATA    TT                                                                                                                                                                                                                        
   ||||||   ||| |||||||||||||||| ||||||||||   |||||||||||             |||    ||                                                                                                                                                                                                                        G
   ATTAAT   CTC GCACGATAAAGGTGGG GTTTTATAGA   AAGTGGTGGTT             GGG    AT                                                                                                                                                                                                                        
         GTC   T                T          ATA           CAATTTATATAAA   TAAA  GTGGAAAGAAGAAGCACGTGGATAGAATAAATGTTTAAATATTTGGTAGATGGCGTAATTTTATAAATATTTTTTTGGGGTGGTAAAAGTAACTTTTAGAGTGGGAAAGGTGGAATTCACTTATTATGAAAGCAGTTTCTTTTTATAAAAGCTTACAGTTTTCCTCGTTTTAAAGTGCAAAAAAACTTTTTATTTAATTCTCACGTATATCTTCCA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3520663

CTGTAATTAGAGTCGTGCTATTTCCACCTCCAAAGTATCTCAATTCACCACCAAATATTATAAAATGTCATAAATACCCCTCAAATTTATAATCCACCACCCTTCCTTATATTCACTTAATCCCCCGTGTTCTAAGTTATTTCTATTTTTTTCAATGAAATATTTATTAGAAGATATTAAAACTTCCATATCAGATGATCTACAGATATGTAATTCTTTTTCTTAGGAAATAAAATTATATTAAGCCAAACTGGCAAATTTCGGAGGATGTTAAGGACCTTCTATATGCACTCTTAATTTATTTTTCAAAAAAACGTGAAATTTTGCTCCTTTTGACATTCGAAAATATTTTTCTTTGACGAAAGTATTATTCACTTAAGGTGGAAAGGGTGAGATTTTCAATGAAAATGGTGGGGTTTTTTTATAAATATTTTAATGCGGTAGATGGTTTATAAATTTGTAAATAAGATAGGTGCACGAAGAAGAAAGGTGTAAAATGGGAAATATATTTAACTTGGTGGTGAAATAAGATATTTTGTGGGTGGAAATAGCACGTCTCCTGTAATTA

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