SE3530664

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6882
  • Mimulus guttatus
  • SE3530664
  • hAT
  • Hat13
  • scaffold_4:14643903-14644561
  • GTAATATT
  • AATATTTAGGGGTGTGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
GT      --        T   --CGGG    TTCGGTTCGGTTTTAGCCAAAAACCGAACCGAACCGAATATATCGGTTTTTGTAAAATTAAAAACCGTGTATGTCGGTTTTTTATCGGTTCGGTTGCTTTCGGTTTCGGTTCGGTTTCGGTTTTTTTCGGTTCGGTTTCGGTTTTTTTCGGTTCAAGCGCAACTATATATTCAAGTTGTACAAACAAAAGAATACAATTACAATTACTTTCACAACTTACTAATGCAATGAAAATATAAAATATTTAATTTCATAGAACTTGACGTAATTTATAGATGATGTATTATGCTTCATTTTTTT
  AATATT  TAGGGGTG GCA      TCGG                                                                                                                                                                                                                                                                                                            
  ||||||  |||||||| |||      ||||                                                                                                                                                                                                                                                                                                            T
  TTATAA  ATCCCCAC CGT      GGCT                                                                                                                                                                                                                                                                                                            
        TG        T   TTTTTT    TTTTGGCTCGGCAAAATTTGGCATGGCTTATCGTTTGGCGTACATGCCAAAAATTAAAAACTTTATGGCTTAATAAGCCAAGCCATACCACCTTTCCATTTATTGGCTTGGCTTTGATATTTTACTGAAGTAAAATATATTATATACATAATAAAATGGGATTATAAATAAAAGATAGAAAGTTAATAAACAGAGTAAGATTCGTAAACAAGTATTTAACTCTGTAACATAAAATAAATAAATCATTAATTTTTAAATGAACTCAAGTACCAAAATTATTACACCATCTACTTTCATCCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3