SE3530665

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_6883
  • Mimulus guttatus
  • SE3530665
  • hAT
  • Hat32
  • scaffold_6:14133277-14133500
  • ACTATGCT
  • TATGCTCAGGGGCGGACCCAAGGTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
AC    C             --CAA     GCCT         --C  C  CCCTGCAGAAATTTTTTTTTTACCTTTTTTTTATGAAATTTTTAATATTTTATGTTATTTATC
  TATG TCAGGGGCGGACC     GGTAT    TGGGGGGGC   TC GC                                                               
  |||| |||||||||||||     |||||    |||||||||   || ||                                                               T
  GTAT AGTCCCCGCCTGG     TCATA    ACCCCCCCG   TT AA                                                               
TC    C             ATCCC     ACCC         ATC  -  AAAAAAAACCTGATTTTACGATGATTTAAATTTGAAACCCCCCCGATTTACCATATTTAATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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